Publications

Denis K Samuylov, Prateek Purwar, Gábor Székely, Grégory Paul (2019). Modelling point spread function in fluorescence microscopy with a sparse Gaussian mixture: trade-off between accuracy and efficiency. ITIP.

Denis K Samuylov, Gábor Székely, Grégory Paul (2019). A Bayesian framework for the analog reconstruction of kymographs from fluorescence microscopy data. ITIP.

Christoph Mayer, Radu Timofte, Grégory Paul (2018). Towards closing the gap in weakly-supervised semantic segmentation with DCNNs: combining local and global models. arXiv preprint arXiv:1808.01625.

Alvaro Gomariz, Stephan Isringhausen, Patrick Helbling, Ute Suessbier, Anton Becker, Andreas Boss, Grégory Paul, Orcun Göksel, Gábor Székely, Szymon Stoma, Simon F Nørrelykke, Markus G Manz, César Nombela-Arrieta (2018). Spatial analysis of the bone marrow stroma using deep learning. SWISS MEDICAL WEEKLY.

Alvaro Gomariz, Patrick Helbling, Stephan Isringhausen, Ute Suessbier, Anton Becker, Andreas Boss, Takashi Nagasawa, Grégory Paul, Orcun Göksel, Gábor Székely, Szymon Stoma, Simon F Nørrelykke, Markus G Manz, César Nombela-Arrieta (2018). Quantitative spatial analysis of haematopoiesis-regulating stromal cells in the bone marrow microenvironment by 3D microscopy. Nature communications.

Denis K Samuylov, Gábor Székely, Grégory Paul (2017). Tracking microtubule ends is more than point tracking. ISBI.

Alvaro Gomariz, Patrick Helbling, Stephan Isringhausen, Ute Suessbier, Anton Becker, Andreas Boss, Takashi Nagasawa, Grégory Paul, Orcun Göksel, Gábor Székely, Szymon Stoma, Simon F Nørrelykke, Markus G Manz, César Nombela-Arrieta (2017). Multiscale image-based quantitative analysis of bone marrow stromal network topology reveals strict spatial constraints for hematopoietic-stromal cellular interactions. HAEMATOLOGICA.

Denis K Samuylov, Lukas A Widmer, Gábor Székely, Grégory Paul (2015). Mapping complex spatio-temporal models to image space: the virtual microscope. ISBI.

DOI Project: De-convolution Project: Microscopy Project: Stochastics

Aurélien Rizk, Grégory Paul, Pietro Incardona, Milica Bugarski, Maysam Mansouri, Axel Niemann, Urs Ziegler, Philipp Berger, Ivo F Sbalzarini (2014). Segmentation and quantification of subcellular structures in fluorescence microscopy images using Squassh. Nature protocols.

Grégory Paul, Janick Cardinale, Ivo F Sbalzarini (2013). Coupling image restoration and segmentation: a generalized linear model/Bregman perspective. IJCV.

DOI Project: Stochastics Project: De-convolution Project: Image Segmentation Project: Microscopy Project: Optimisation

Janick Cardinale, Grégory Paul, Ivo F Sbalzarini (2012). Discrete region competition for unknown numbers of connected regions. ITIP.

Yuanhao Gong, Grégory Paul, Ivo F Sbalzarini (2012). Coupled signed-distance functions for implicit surface reconstruction. ISBI.

Grégory Paul, Janick Cardinale, Ivo F Sbalzarini (2011). An alternating split Bregman algorithm for multi-region segmentation. ASILOMAR.

Grégory Paul, Christian L Müller, Ivo F Sbalzarini (2011). Sensitivity analysis from evolutionary algorithm search paths. EVOLVE.

Christian L Müller, Grégory Paul, Ivo F Sbalzarini (2011). Sensitivities for free: CMA-ES based sensitivity analysis.

Céline Hauzy, Thomas Tully, Thierry Spataro, Grégory Paul, Roger Arditi (2010). Spatial heterogeneity and functional response: an experiment in microcosms with varying obstacle densities. Oecologia.

Lydia Robert, Grégory Paul, Yong Chen, François Taddei, Damien Baigl, Ariel B Lindner (2010). Pre-dispositions and epigenetic inheritance in the Escherichia coli lactose operon bistable switch. Molecular systems biology.

Jo A Helmuth, Grégory Paul, Ivo F Sbalzarini (2010). Beyond co-localization: inferring spatial interactions between sub-cellular structures from microscopy images. BMC bioinformatics.

Dea Slade, Ariel B Lindner, Grégory Paul, Miroslav Radman (2009). Recombination and replication in DNA repair of heavily irradiated Deinococcus radiodurans. Cell.

Eric J Stewart, Richard Madden, Grégory Paul, François Taddei (2005). Aging and death in an organism that reproduces by morphologically symmetric division. PLoS Biology.

Julien Guyon, Ariane Bize, Grégory Paul, Eric Stewart, Jean-Francois Delmas, Francois Taddei (2005). Statistical study of cellular aging. CEMRACS.